are code chicken lib and code chicken core the same

#ARE CODE CHICKEN LIB AND CODE CHICKEN CORE THE SAME DOWNLOAD#

#ARE CODE CHICKEN LIB AND CODE CHICKEN CORE THE SAME DOWNLOAD#

Program Download Locationįor ready-to-install packages and example bam files, go to the ngs.plot download GDrive. A web-based version (integrated into Galaxy) is also available for the ones who are 'allergic' to terminals. A user only needs to create a very small text file called configuration, telling the program which samples to look at and how they should be combined with different regions, and then run the program with one command. For example, ngs.plot was used to draw a plot for all the genes on the mouse genome from 71GB of ChIP-seq data in 25 min, with a memory footprint of 2.7GB using 4 x 2.4GHz CPU cores. It handles large sequencing data efficiently and has only modest memory requirement. A user can ask for a functionally important region to be displayed in one command. The signature advantage of ngs.plot is that it collects a large database of functional elements for many genomes. Although a genome browser (such as the UCSC genome browser) allows a researcher to visualize these data, it limits the view to a slice of the genome, while the genome is like a huge collection of functional elements that can be classified into different categories each category of elements may perform distinct functions and they might contain sub-modules. It is very helpful to look at the enrichment of those sequences at various functional regions. RNA-seq which measures the gene expression levels. ChIP-seq which profiles genome-wide protein-DNA interactions 2. Applications include but are not limited to: 1. It can now determine more than a billion DNA sequences within a week, generating terabytes of data. The NGS technology has been tremendously improved in the past few years. To be brief: ngs.plot is a program that allows you to easily visualize your next-generation sequencing (NGS) samples at functional genomic regions.ĭNA sequencing is at the core of genomics. Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

Are code chicken lib and code chicken core the same